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Influenza

InfluenzaNeuraminidase InhibitorsIIV vs LAIVChemoprophylaxis

30-Second Snapshot

What it is:An acute respiratory viral illness spread by droplets, hitting hardest at the extremes of age (under 2, over 65) and anyone with cardiopulmonary disease, immunosuppression, or pregnancy. It looks like a dozen other respiratory bugs on day one, which is exactly why testing and timing matter.

The core problem:The virus replicates fast in respiratory epithelium, and the two enzymes it depends on to do that (cap-dependent endonuclease for transcription, neuraminidase for release) are the only two drug targets that actually work anymore. Everything pharmacologic in this chapter is built around blocking one of those two enzymes, or preventing infection before it starts.

What you do about it:Prevent first (annual vaccination for everyone 6 months and up), treat early if infected (antivirals only help if started within 48 hours, ideally within 12), and know that the adamantanes are dead weight now because of resistance.

Worth knowing

Think of this chapter as two enzymes and a clock.Cap-dependent endonuclease and neuraminidase are the only druggable targets left. The clock is the 48-hour window (12 hours is better) after symptom onset, after which antivirals stop meaningfully helping. Almost every fact in this chapter hangs off one of those two ideas.

Virology - Why the Drugs Target What They Target

Influenza spreads person-to-person through inhaled respiratory droplets from an infected person's cough or sneeze. Incubation is 1–7 days, averaging 2.Adults are contagious starting the day beforesymptoms appear through about 7 days after onset. Kids shed virus longer, past 10 days, and severely immunocompromised patients can shed for weeks to months. That shedding-before-symptoms detail is exactly why droplet precautions and hand hygiene matter more than "isolating the sick person" alone.

The two targets that matter

Viral enzymeJobDrug class that blocks it
Cap-dependent endonucleaseSnips the cap off host mRNA so the virus can use it to prime its own viral mRNA transcriptionBaloxavir (single agent in this class)
NeuraminidaseCleaves sialic acid so newly made virions can bud off and release from the infected cell instead of clumping on the surfaceOseltamivir, zanamivir, peramivir
The unlock

Baloxavir stops the virus from getting started(blocks transcription before new virus is even made). Neuraminidase inhibitors stop the virus from getting out(blocks release of virus that's already been made). Different points in the replication cycle, which is why baloxavir works as a single dose while the NA inhibitors need days of dosing to keep suppressing ongoing release.

Why the adamantanes are gone

Amantadine and rimantadine block the M2 ion channel, a third mechanism that used to work against influenza A. Widespread resistance means the CDC no longer recommends them for treatment orprophylaxis in the United States. If you see them on an exam as an answer choice for current influenza management, they're almost always the trap.

Clinical Presentation

Influenza looks like a lot of other respiratory illnesses on presentation, which is why testing exists. Course and severity are shaped by age, immune status, viral strain, smoking, comorbidities, pregnancy, and how much preexisting immunity a person has (from prior infection or vaccination).

CategoryFindings
ClassicRapid-onset fever, myalgia, headache, malaise, nonproductive cough, sore throat, rhinitis
Pediatric-specificNausea, vomiting, and otitis media are more commonly reported in children than adults
TimelineSymptoms typically resolve in 3–7 days, though cough and malaise can drag on past 2 weeks

Complications - know the list

Exacerbation of underlying comorbidities, primary viral pneumonia, secondary bacterial pneumonia, other secondary respiratory infections (sinusitis, bronchitis, otitis), encephalopathy, transverse myelitis, myositis, myocarditis, pericarditis, and Reye syndrome.

Primary viral pneumonia

Hits pregnant patients and those with underlying cardiovascular disease hardest. Starts as fever and dry cough, then the cough turns productive with blood-tinged sputum, then rapidly progresses to dyspnea, hypoxemia, and cyanosis with bilateral interstitial infiltrates on imaging. Get a chest radiograph any time pneumonia is suspected. This is not "just the flu" anymore, it's an admission.

Easy to confuse

Primary viral pneumonia(direct viral invasion, rapid progression, days 1–3) is a different beast from secondary bacterial pneumonia(a second illness that shows up after the patient seemed to be improving, classically around day 5–7). The improve-then-worsen pattern is the tell for secondary bacterial infection, and it's exactly the pattern the handbook's evaluation criteria are built around (more in Monitoring).

Diagnosis

CBC and chemistry panels assess overall status but don't diagnose influenza. The actual diagnosis rests on virus-specific testing, and the gold standard is RT-PCR or viral culture.

TestSensitivity / SpecificityTurnaroundNotes
RIMA(rapid influenza molecular assay)90–95% sens · 55–99% spec~15–30 minDetects viral RNA, point-of-care friendly
RT-PCRHigh sens and spec (gold standard)~45 min – 6 hoursNucleic acid amplification, most reliable
RIDT(rapid antigen / point-of-care)Lower than RIMA/PCRFastAlso includes DFA/IFA fluorescence antibody methods
How to actually use this

RIMA and RT-PCR both detect viral RNA and both run circles around older antigen-based RIDTs on sensitivity. The tradeoff is speed vs accuracy: RIDT/RIMA are fast enough to inform same-visit antiviral decisions, RT-PCR is the confirmatory gold standard when the stakes are higher (hospitalized patient, outbreak investigation, high-risk patient where a false negative changes management).

Vaccination - The Actual Prevention Strategy

Vaccination is the single best way to cut morbidity and mortality from influenza. Hand hygiene, covering coughs, and avoiding sick contacts help too, and chemoprophylaxis has a role in specific situations (see next section), but none of those replace the vaccine.

IIV vs LAIV

CharacteristicIIV (inactivated)LAIV (live-attenuated)
Age approved≥6 months2–49 years
Immune status requirementImmunocompetent orimmunocompromisedImmunocompetent only
Viral propertiesInactivated (killed) A(H3N2), A(H1N1), BLive-attenuated A(H3N2), A(H1N1), B
RouteIntramuscularIntranasal
Immune responseHigh serum IgGLower IgG, higher mucosal IgA
High-dose and adjuvanted options for 65+

Older adults still benefit from vaccination (fewer complications, less hospitalization, lower death), but they mount a weaker antibody response and stay more susceptible. That's the rationale behind high-dose (Fluzone HD Quadrivalent) and adjuvanted (Fluad Quadrivalent) IIV products specifically approved for age ≥65.

Special situations

Egg allergy - the ACIP three-tier algorithm

This is a favorite exam trap because "egg allergy = no flu vaccine" used to be the rule and is now outdated. ACIP's current approach is tiered by whichvaccine caused the prior severe reaction:

  • Severe reaction (anaphylaxis) to any egg-based IIV or LAIV, any valency:can consider ccIIV4 (cell culture-based) or RIV4 (recombinant), since neither is egg-based.
  • Severe reaction to any ccIIV, any valency:can consider RIV4.
  • Severe reaction to any RIV, any valency:can consider ccIIV4.

The pattern: match the patient to whichever egg-free product they haven't already reacted to. A simple egg allergy without anaphylaxis to the vaccine itself is not a contraindication to standard vaccination at all.

The thimerosal myth (and why it keeps coming up)

Some patients (especially parents of young children) worry about thimerosal, a mercury-based preservative in some multidose vials, because of an unfounded and thoroughly debunked link to autism. There is no scientifically persuasive evidence of harm from thimerosal exposure via vaccination, and accumulating evidence actually supports the lack of harm. This is worth knowing cold for patient counseling, since "does the flu shot cause autism" is a real question you will get asked.

Chemoprophylaxis - Adjunct, Not Replacement

Antiviral drugs used for prevention are adjuncts to vaccination, never a substitute for it. Oseltamivir and zanamivir are roughly 70–90% effectiveat preventing susceptible-strain influenza when used prophylactically, useful both for seasonal prophylaxis and for post-exposure prophylaxis after a household contact is diagnosed. Peramivir is not approved for chemoprophylaxisat all, treatment only. Baloxavir given within 24 hours of symptom onset in an index case cut household transmission by 86%.

Who gets prophylaxis

The 48-hour cutoff

Postexposure prophylaxis should notbe started if more than 48 hours has passed since exposure. Same clock as treatment, different indication.

Duration

If the patient gets vaccinated, prophylaxis can generally stop 14 days after vaccination (once titers are up) in non-institutionalized people. Post-exposure prophylaxis runs for 10 days after the last exposure. For high-risk patients where vaccination is contraindicated or expected to be ineffective, chemoprophylaxis continues for as long as flu is circulating in the community that season.

LAIV and antivirals don't mix

Influenza antivirals inhibit viral replication, which also cripples the live-attenuated vaccine. Don't give LAIV until 48 hoursafter the last antiviral dose, and don't give antivirals for 2 weeksafter LAIV. Antivirals given anywhere from 48 hours before to 14 days after LAIV can blunt the vaccine response; if that happens, the patient can just be revaccinated with IIV or RIV4 instead.

Treatment - Goals and Timing

Goals:control symptoms, prevent complications, cut down work/school absenteeism, and limit spread to others.

The window that determines everything

Antivirals work best started within 48 hoursof symptom onset. Benefit is highly time-dependent: the earlier, the better, with the real sweet spot being within 12 hoursof onset. Past 48 hours, the evidence for benefit falls apart for most patients. This single fact drives triage: don't wait on confirmatory testing if the clinical picture is clear and the clock is running.

Supportive care runs alongside antivirals, not instead of them: adequate sleep, low activity level, staying home from work or school (rest andinfection control), adequate fluids, and symptomatic measures like acetaminophen for fever, antihistamines for rhinitis, and lozenges/warm tea/soup for cough and sore throat.

Which drug, and for whom

Neuropsychiatric adverse effects in kids

Delirium, seizures, hallucinations, and self-injury have been reported in pediatric patients on oseltamivir and peramivir.Worth flagging to parents before starting therapy, not after.

Antiviral Dosing Table

Age cutoffs and duration are the two things that get tested here. Oseltamivir is approved for treatment past 14 days of age, zanamivir past 7 years, peramivir at 2 years and up (IV only, and it's the only IV option).

DrugAdult treatmentAdult prophylaxisDuration
Cap-dependent endonuclease inhibitor
Baloxavir40–<80 kg: 40 mg ×1
>80 kg: 80 mg ×1
Not approvedSingle dose
Neuraminidase inhibitors
Oseltamivir75 mg BID75 mg dailyTx 5 days · Ppx 10 days
Zanamivir10 mg (2×5 mg inhalations) BID10 mg dailyTx 5 days · Ppx 10 days
Peramivir(IV only)600 mg IV over 15–30 min ×1Not approvedSingle dose (13 yrs+)

Pediatric oseltamivir - weight and age banded

Age / weightTreatment dose (BID)Prophylaxis dose (daily)
Term infant 0–8 months3 mg/kg/dose BIDNot recommended if <3 months
9–11 months3.5 mg/kg/dose BID (AAP) or 3 mg/kg/dose BID (CDC/FDA)3.5 mg/kg/dose daily
≥1 year, ≤15 kg30 mg BID30 mg daily
≥1 year, >15–23 kg45 mg BID45 mg daily
≥1 year, >23–40 kg60 mg BID60 mg daily
≥1 year, >40 kg75 mg BID75 mg daily

Pediatric treatment runs 5 days across all weight bands, prophylaxis runs 10 days. Preterm infants are dosed by postmenstrual age(gestational + chronological): <38 weeks 1 mg/kg BID, 38–40 weeks 1.5 mg/kg BID, >40 weeks 3 mg/kg BID.

Drug-by-Drug Detail

Baloxavir - the one-dose option

Single oral dose based on weight (40 mg for 40 to <80 kg, 80 mg for >80 kg), no titration, no multi-day course. That convenience is a real adherence win over a 5-day BID regimen.

Counseling point hiding in the PK data

Time to peak concentration is about 4 hours, and food plus polyvalent cations(calcium, aluminum, magnesium, iron) can drop peak concentration by up to 48%. Same logic as counseling on tetracyclines or fluoroquinolones: separate from dairy products, antacids, and mineral/multivitamin supplements. Long half-life (~79 hours) is why one dose covers the whole course. Metabolized via UGT1A3 and CYP3A4.

Longer dosing (i.e., considering NA inhibitor or repeat dosing strategies) is only entertained for patients who remain severely ill after 5 days, which is an exception, not the norm.

Neuraminidase inhibitors - oseltamivir vs zanamivir vs peramivir

All three are active against influenza A andB, which sets them apart from the extinct adamantanes (influenza A only, and irrelevant now anyway due to resistance).

  • Oseltamivir:oral capsule, the workhorse. Approved down to 14 days old for treatment, making it the go-to in very young infants when a drug is actually needed.
  • Zanamivir:oral inhalation (dry powder), so it requires adequate inspiratory effort and coordination, meaning it's a poor choice for anyone with underlying bronchospastic disease or who can't manage an inhaler technique. Approved down to age 7 for treatment.
  • Peramivir:the only IV option, single infusion over 15–30 minutes. Useful when oral/inhaled routes aren't feasible (severely ill, can't swallow, can't coordinate an inhaler) but it's treatment-only, no prophylaxis indication.

Renal impairment requires dose adjustment for all three based on creatinine clearance; check current CDC clinician guidance for the specific adjustment table rather than guessing.

Adamantanes - why they're basically dead

Amantadine and rimantadine used to be first-line for influenza A. Widespread resistance among circulating strains means the CDC no longer recommends them for treatment orprophylaxis in the US. If an exam question describes a patient with influenza and lists amantadine as an answer choice, it's testing whether you know it's obsolete, not whether you'd actually prescribe it.

Special Populations

PopulationVaccinationAntivirals
PregnancyIIV yes, every trimester. LAIV no.Not a contraindication to oseltamivir/zanamivir; oseltamivir preferred for treatmentgiven its systemic activity. Drug of choice for prophylaxis in pregnancy is undefined.
BreastfeedingStandard recommendations applyBoth adamantanes and NA inhibitors are excreted in breast milk; avoid in nursing mothers
ImmunocompromisedAnnual IIV yes. LAIV no(live virus)Consider post-exposure prophylaxis given blunted vaccine response; oseltamivir/zanamivir class is not preferred during pregnancy for the fetal-effect concerns noted above, and adamantanes/NAIs generally carry fetal-effect caution language in labeling
Age <9 years, first-time vaccineesTwo IIV doses ≥4 weeks apartWeight/age-banded oseltamivir dosing; zanamivir needs age ≥7 and inhaler coordination
The pregnant patient decision tree, simplified

Vaccinate with IIV (never LAIV), and if she gets influenza, oseltamivir is the preferred treatment because it has systemic (not just local) antiviral activity. Some experts push oseltamivir to 150 mg BID for severe illness in pregnancy, though optimal prophylactic dosing in pregnancy simply isn't established yet.

Monitoring - What, When, Why

ParameterWhenWatching for
Fever, myalgia, headache, malaise, cough, sore throat, rhinitisDaily during illnessExpected resolution within ~1 week
Symptom trajectory past day 7Day 7–10Worsening after day 7, or persistence past day 10, suggests secondary bacterial infectionand warrants a physician visit
Respiratory statusThroughout, especially pregnant/cardiopulmonary patientsDyspnea, hypoxemia, blood-tinged sputum → think primary viral pneumonia, get imaging
Neuropsychiatric status (pediatric)Throughout oseltamivir/peramivir therapyDelirium, hallucinations, self-injurious behavior
Renal functionBaseline in patients with renal impairmentNA inhibitor dose adjustment needs

Patient Counseling - What You'll Actually Say

  • "Get your flu shot every year, ideally in October or November."The strains change, so last year's shot doesn't cover this year's circulating virus.
  • On egg allergy:"A mild egg allergy isn't a reason to skip the flu vaccine. If you've had a severe reaction to a flu shot before, we can pick a product made without eggs."
  • On the autism myth:"The thimerosal in some flu vaccines has been extensively studied and there's no credible evidence it causes autism. That link has been thoroughly debunked."
  • On antiviral timing:"This medication works best if you start it within the first day or two of feeling sick. Call as soon as symptoms start, don't wait it out."
  • On baloxavir specifically:"Take this away from milk, antacids, or calcium/iron/magnesium supplements, they can cut how much of the drug your body absorbs by almost half."
  • On oseltamivir in kids:"Call us right away if your child seems confused, has hallucinations, or does anything that could hurt themselves while on this medication."
  • On isolation:"Stay home from work or school. You're contagious starting the day before you feel sick and for about a week after, longer if you're a kid."
  • On when to come back:"If you start feeling better and then get worse again, or you're still sick after 10 days, come back in. That pattern can mean a second infection on top of the flu."

High-Yield Recall Sheet

  • Incubation 1–7 days, average 2.Adults contagious from the day before symptoms through day 7; kids past day 10.
  • Antivirals work best within 48 hours of onset, ideally within 12 hours.Past 48 hours, benefit largely disappears.
  • Two enzyme targets:cap-dependent endonuclease (baloxavir) and neuraminidase (oseltamivir, zanamivir, peramivir).
  • Adamantanes are obsoletedue to widespread resistance, not recommended for treatment or prophylaxis.
  • Peramivir is IV-only and treatment-only,no prophylaxis indication.
  • Baloxavir is a single dose:40 mg if 40–<80 kg, 80 mg if >80 kg. Take away from food/cations.
  • Oseltamivir age floor: 14 days.Zanamivir: 7 years for treatment. Peramivir: 2 years.
  • NA inhibitor and baloxavir durations:oseltamivir/zanamivir 5 days treatment, 10 days prophylaxis; peramivir and baloxavir are single-dose.
  • NA inhibitor prophylaxis efficacy ~70–90%.Baloxavir within 24h of an index case's onset cuts household transmission by 86%.
  • Post-exposure prophylaxis window: 48 hours.Don't start it later than that.
  • Vaccinate with IIV, not LAIV, in:pregnancy, immunocompromise, age under 2 or over 49, egg-anaphylaxis-to-LAIV history, GBS within 6 weeks.
  • LAIV and antivirals don't mix:hold antivirals 48h before to 2 weeks after LAIV.
  • Kids under 9, first vaccination:two IIV doses, 4+ weeks apart.
  • Egg-allergy algorithm:match the patient to whichever egg-free product (ccIIV4 or RIV4) they haven't already reacted to.
  • Neuropsychiatric AEs(delirium, seizures, hallucinations, self-injury) reported in pediatric patients on oseltamivir and peramivir.
  • Symptoms past day 10, or worsening after day 7,suggests secondary bacterial infection, not ongoing flu.
  • Oseltamivir preferred in pregnancyfor treatment due to systemic activity; prophylaxis drug of choice in pregnancy is undefined.
  • Both adamantanes and NA inhibitors are excreted in breast milkand should be avoided while breastfeeding.